VerifiedEvidence: highv1.0.0

Transition Matrix

A table giving the probability of moving from each health state to every other state within one Markov model cycle, each row summing to one.

Last reviewedDarrin Baines IP Ltd

Concept Architecture

Concept

Theoretically, Transition Matrix is the mathematical representation of the probabilities of moving between health states in a state-transition model or Markov chain during a single model cycle. Each element of the matrix specifies the probability of transitioning from one health state to another, thereby defining the dynamic behaviour of the model. In health economics, the transition matrix forms the core computational structure used to model disease progression, treatment effects and long-term clinical and economic outcomes.

Mathematically, a transition matrix is a square stochastic matrix in which rows correspond to current health states and columns correspond to future health states. Each element represents a transition probability, and the probabilities within each row sum to one. Successive multiplication of the cohort state vector by the transition matrix generates the evolution of the model over time.

In practice, transition matrices are constructed using probabilities estimated from clinical trials, observational studies, survival analyses or epidemiological data. Separate matrices may be used for different patient subgroups or model cycles when transition risks vary over time. The matrix is repeatedly applied throughout the simulation to estimate state occupancy, costs, quality-adjusted life years and other health economic outcomes.


Purpose

Used to define the probabilities of movement between health states, providing the mathematical basis for simulating disease progression and estimating long-term clinical and economic outcomes.


Mathematical Formulae

Primary Formula

Transition matrix:

?? =

?p??  p??  ?  p???
?p??  p??  ?  p???
? ?    ?   ?   ? ?
?p??  p??  ?  p???

where:

  • p?? = P(X??? = j ? X? = i)

and

????� p?? = 1

for every row i.

Supporting Formulae

State update:

????? = ?????

State distribution after n cycles:

??? = ?????�

Related Mathematical Methods

  • Markov chains
  • Matrix algebra
  • State-transition modelling
  • Cohort simulation
  • Eigenvalue analysis
  • Probabilistic sensitivity analysis

Example

A three-state chronic disease model consists of Stable Disease, Progressive Disease and Death.

The annual transition matrix is

?? =

?0.85  0.10  0.05?
?0.00  0.80  0.20?
?0.00  0.00  1.00?

The initial cohort is

??? = [1, 0, 0]

After one cycle:

??? = ????? = [0.85, 0.10, 0.05]

The resulting state occupancies are then used to calculate expected costs and quality-adjusted life years for the cycle.


Excel Implementation

FunctionExample FormulaHealth Economics Application
MMULT=MMULT(StateVector,TransitionMatrix)Calculate state distribution after each cycle
SUM=SUM(B2:D2)Verify that each row of the transition matrix sums to one
SUMPRODUCT=SUMPRODUCT(StateVector,CostVector)Calculate expected costs after each transition
SUMPRODUCT=SUMPRODUCT(StateVector,UtilityVector)Calculate expected QALYs after each transition
MUNIT=MUNIT(NumberStates)Create identity matrices for model construction

VBA (Optional)

Automate repeated application of transition matrices across model cycles and summarise cumulative health and economic outcomes.


Sources

  • Norris JR. Markov Chains. Cambridge University Press.
  • Sonnenberg FA, Beck JR. Markov models in medical decision making: a practical guide. Medical Decision Making. 1993;13(4):322?338.
  • Siebert U, Alagoz O, Bayoumi AM, et al. State-transition modeling: a report of the ISPOR-SMDM Modeling Good Research Practices Task Force-3. Medical Decision Making. 2012;32(5):690?700.
  • Briggs A, Claxton K, Sculpher M. Decision Modelling for Health Economic Evaluation. Oxford University Press; 2006.
  • NICE. Health Technology Evaluation Manual.
  • Drummond MF, Sculpher MJ, Claxton K, Stoddart GL, Torrance GW. Methods for the Economic Evaluation of Health Care Programmes. 4th ed. Oxford University Press.

Library

Publications

3
  • Journal article

    State-Transition Modeling: A Report of the ISPOR-SMDM Modeling Good Research Practices Task Force-3 — Siebert, Alagoz, Bayoumi, Jahn, Owens, Cohen & Kuntz, Task Force Report 3 ed., 2012 (Value in Health / Medical Decision Making)

    Best-practice guidance for cohort and individual-based state-transition (Markov) models, covering development, analysis, validation and reporting.

  • Book

    Markov Chains — J. R. Norris, 1st Edition ed., 1997 (Cambridge University Press)

    A rigorous introduction to discrete- and continuous-time Markov chains, transition structures, recurrence and long-run behaviour.

  • Book

    Markov Processes for Stochastic Modeling — Masaaki Kijima, 1st Edition ed., 1997 (Chapman & Hall)

    An applied mathematical treatment of discrete- and continuous-time Markov processes for modeling the transient behaviour of stochastic systems.

Frequently Asked Questions (6)

  • What is a transition matrix?

    A table giving the probability of moving from each health state to every other state within one Markov model cycle, each row summing to one.

    Source: Sonnenberg FA, Beck JR. Markov models in medical decision making: a practical guide. Medical Decision Making. 1993;13(4):322-338. doi:10.1177/0272989X9301300409.

  • How is a transition matrix used to move a cohort forward?

    To advance a cohort by one cycle, the current distribution of patients across states is combined with the transition matrix, which holds the probability of moving from each state to every other in that cycle. Applying the matrix redistributes the cohort, sending the appropriate fraction of each state's occupants to their next states and leaving the rest in place. Repeating this cycle after cycle traces the cohort through the whole horizon. The matrix is thus the engine that drives the model forward. Briggs and colleagues (2006) describe this use.

    Source: Briggs et al. 2006

  • How is a transition matrix structured?

    A transition matrix is a square table with one row and one column for each health state. Each entry gives the probability of moving from the row's state to the column's state in one cycle, including the probability of remaining in the same state, which lies on the diagonal. Because a patient in any state must move to some state, the probabilities in each row sum to one. This structure captures all the possible transitions and their probabilities in a single specification.

    Source: Sonnenberg & Beck 1993

  • Why must each row of a transition matrix sum to one?

    Each row of a transition matrix must sum to one because it gives the probabilities of all the states a patient in that row's state could move to in a cycle, and the patient must end the cycle in some state, so these probabilities are exhaustive and mutually exclusive. If a row summed to less or more than one, some probability would be missing or over-counted, and the cohort would not be conserved. Ensuring rows sum to one is therefore a basic check that the matrix is valid.

    Source: Sonnenberg & Beck 1993

  • How is a transition matrix used in a Markov model?

    A transition matrix is used to advance the cohort through the Markov model: multiplying the current distribution across states by the matrix gives the distribution after one cycle, and repeating this steps the cohort through the states over the horizon. In an individual model, the row for a patient's current state gives the probabilities from which their next state is sampled. The transition matrix thus governs the movement of patients between states each cycle, driving the model's evolution over time.

    Source: Sonnenberg & Beck 1993

  • What does the diagonal of a transition matrix represent?

    The diagonal of a transition matrix represents the probabilities of remaining in the same state over a cycle, since each diagonal entry is the probability of moving from a state to itself. For a state patients tend to stay in, the diagonal value is high, while for a state they leave quickly it is low. For an absorbing state such as death, the diagonal entry is one, since patients cannot leave. The diagonal thus captures how likely patients are to persist in each state each cycle.

    Source: Sonnenberg & Beck 1993

Trust Record

Verified by Dr Darrin Baines

British health economist

Professional identity: darrinbaines.org

Verification date: 8 Oct 2025

Content version: 1.0.0

Canonical Identity

Term code
HE-EM-MM-027

Stable URI · Machine-readable · Resolvable · CC BY 4.0